ProteinQure Raises $11M Series A to Scale Precision Peptide-Based Drug Delivery
June 18, 2025
byFenoms Startup Research
ProteinQure, a computational biology startup designing next-generation peptide therapeutics, has raised $11 million in Series A funding to expand its platform for precision drug development. The round was led by Golden Ventures, Kensington Capital, Tom Williams of Heron Rock Fund, and other biotech-focused investors.
Founded by Lucas Siow, ProteinQure is at the forefront of structure-based peptide design - leveraging quantum physics, machine learning, and biological modeling to accelerate the discovery of novel, selective, and stable therapeutics.
The company's platform aims to radically shorten the time between molecular modeling and lab-ready candidates, tackling some of the hardest therapeutic targets with a new class of customizable proteins.
What ProteinQure Actually Does
ProteinQure operates at the intersection of AI, quantum simulation, and structural biology. Its platform allows researchers to:
- Design peptides that bind precisely to target proteins (e.g., ion channels, GPCRs, intracellular complexes)
- Optimize binding affinity, stability, and manufacturability simultaneously
- Rapidly iterate through millions of configurations using physics-informed simulations
- Transition promising designs directly into lab-scale synthesis for in vivo validation
The startup offers both end-to-end development for partners and a growing suite of internal therapeutic programs in areas like oncology, autoimmune disease, and rare genetic conditions.
Why Peptides Are Booming
Peptide therapeutics are re-emerging as one of the most promising drug classes due to their:
- High specificity
- Low toxicity profiles
- Ability to access intracellular and difficult-to-reach targets
- Amenability to chemical modification for extended half-life or improved delivery
According to Precedence Research, the global peptide therapeutics market is projected to grow from $42 billion in 2023 to $74.5 billion by 2032, with a CAGR of 7.9%. Meanwhile:
- Over 700 peptide drugs are in preclinical or clinical development globally (Frost & Sullivan)
- 60+ peptide-based drugs have been FDA-approved, with growing interest from big pharma in oncology, endocrinology, and neurology
- In silico design platforms like ProteinQure are helping reduce the typical 5–6 years of preclinical work down to less than 24 months
- Structural drug design, powered by tools like AlphaFold, cryo-EM, and quantum modeling, is opening up entirely new classes of binders and mechanisms
Peptides sit in a sweet spot: more stable than proteins, more selective than small molecules, and now - thanks to computational design - more programmable than ever.
Why This Raise Matters
ProteinQure’s Series A round is a signal that infrastructure-focused biotech is maturing beyond hype and into execution. While many AI-driven drug discovery startups focus on image-based screening or retrosynthesis, ProteinQure is working at the molecular modeling layer - where the blueprint for entirely new drugs is written.
This isn’t just about speeding up the pipeline. It’s about expanding the map of what’s possible to build in therapeutic chemistry.
And that’s where the real playbook shift comes in.
ProteinQure didn’t follow the typical biotech route of anchoring their strategy around one molecule or indication. Instead, they built a generative system - a design engine that improves every time it runs. Each peptide modeled feeds the next. Each structure simulated enriches the learning layer underneath.
Here’s the ultra-leverage: they didn’t treat drug design as a one-time breakthrough - they treated it as a compounding software problem.
If you’re a founder in any complex space - not just biotech - this matters. Because in a world of one-off wins, the startup that builds a reusable advantage doesn’t just compete better. It gets more efficient with every iteration.
ProteinQure is doing what the smartest SaaS companies do: turning discovery into infrastructure, and infrastructure into momentum. That’s how you build a moat that deepens with scale - not just revenue, but knowledge.
Market Outlook: Structure-Based Drug Design Is Scaling
As the life sciences sector undergoes a digital transformation, structure-based approaches are gaining new ground:
- Structure-based drug design (SBDD) is projected to grow by 20% CAGR, reaching a $12.5B market size by 2030 (GlobalData)
- Advances in cryo-EM, NMR, and AlphaFold are unlocking thousands of new protein structures every year, creating massive design opportunities
- Computational biology startups raised over $3.7B in venture capital in 2023, showing strong institutional support for model-first discovery
- Pfizer, Amgen, and Sanofi have all entered co-development deals with SBDD platforms to accelerate high-risk/high-reward programs
ProteinQure is one of the few startups pairing first-principles physics with machine learning to generate biologically meaningful, manufacturable molecules - not just predictions, but production-grade designs.
What’s Next for ProteinQure?
With this funding, ProteinQure will:
- Expand its design platform to support macrocycles, protein scaffolds, and hybrid molecules
- Grow its internal pipeline of peptide drugs in immuno-oncology and intracellular signaling
- Deepen partnerships with pharmaceutical companies for co-development and licensing deals
- Invest in automation tools for wet lab validation, reducing the time from design to assay
- Scale its engineering and bioinformatics teams to integrate new data into model refinement
The company also plans to release transparency tools for pharma partners, including simulation visualizations and AI explainability modules - helping bridge the trust gap between algorithm and biologist.